A collection of my research projects, visualizations, and tools.
Interactive network visualization tool
An interactive web-based tool for visualizing MD-PhD student mentorship relationships and thesis advisory committees. Features dynamic network layouts, data upload capabilities, and customizable visualizations.
Technologies: D3.js, JavaScript, HTML5 Canvas, Network Analysis
Clonal Observation from METhylation
An interactive visualization demonstrating the COMET algorithm for detecting clonal hematopoiesis from DNA methylation data. Explore how the algorithm uses Hardy-Weinberg equilibrium to calculate variant allele frequency from methylation patterns.
Technologies: React, JavaScript, SVG, Tailwind CSS
SCARLET: Stem Cells and Age-ReLated Epigenetic Trajectories
An interactive demo of SCARLET, a parsimonious mathematical model of how methylation changes in blood arise and propagate through hematopoietic stem cell divisions. Adjust the stem cell pool size, division rate, and methylation switching rates to see how the distribution of methylation changes with age. Accompanies Crofts, Grenko et al., Nature Aging (2026).
Technologies: JavaScript, HTML5 Canvas